PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570672.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 281aa    MW: 32215.2 Da    PI: 9.8929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.65e-1639122186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v +L+ea+++++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++++      s +p++++l+
  XP_012570672.1  39 EWSEGAVSTLLEAYESKWILRNRAKLKGQDWEDVAKYVssrsNSTKSPKTQTQCKNKIESMKKRYRSESATSES------SAWPLYSRLD 122
                     5*************************************98777778889999***************9999986......5799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1937122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNEKIETKDH NPQILNPKEE SPRKHIIIGS GGERLKRDEW SEGAVSTLLE AYESKWILRN  60
RAKLKGQDWE DVAKYVSSRS NSTKSPKTQT QCKNKIESMK KRYRSESATS ESSAWPLYSR  120
LDLLLRGTGQ LCSTIPTQHV TTTPSQLQHE DELETKSSDH VANKNPQDTD SSTPALYSEK  180
DERKCNKRRK KTENNNNRQK KEAMGIAESI RWLAEVVVRS EQTRMDTLKE IEKMRVEAEA  240
KRGEMEIKRT EIIANTQLEI ARIFANVNNK GVDSSLRIGR S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260061e-117AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
GenBankBT1474221e-117BT147422.1 Medicago truncatula clone JCVI-FLMt-14I11 unknown mRNA.
GenBankCR9564021e-117CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570672.10.0PREDICTED: trihelix transcription factor ASIL1 isoform X2
TrEMBLG7J0H61e-138G7J0H6_MEDTR; Transcription factor
STRINGGLYMA13G26550.11e-127(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-94sequence-specific DNA binding transcription factors